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Landscape of the genome and host cell response of Mycobacterium shigaense reveals pathogenic features.

Identifieur interne : 000107 ( Main/Exploration ); précédent : 000106; suivant : 000108

Landscape of the genome and host cell response of Mycobacterium shigaense reveals pathogenic features.

Auteurs : Haiqin Jiang [République populaire de Chine] ; Jiya Sun [République populaire de Chine] ; Yanqing Chen [République populaire de Chine] ; Zhiming Chen [République populaire de Chine] ; Le Wang [République populaire de Chine] ; Wei Gao [République populaire de Chine] ; Ying Shi [République populaire de Chine] ; Wenyue Zhang [République populaire de Chine] ; Youming Mei [République populaire de Chine] ; Santosh Chokkakula [République populaire de Chine] ; Varalakshmi Vissa [République populaire de Chine] ; Taijiao Jiang [République populaire de Chine] ; Aiping Wu [République populaire de Chine] ; Hongsheng Wang [République populaire de Chine]

Source :

RBID : pubmed:29934568

Descripteurs français

English descriptors

Abstract

A systems approach was used to explore the genome and transcriptome of Mycobacterium shigaense, a new opportunistic pathogen isolated from a patient with a skin infection, and the host response transcriptome was assessed using a macrophage infection model. The M. shigaense genome comprises 5,207,883 bp, with 67.2% G+C content and 5098 predicted coding genes. Evolutionarily, the bacterium belongs to a cluster in the phylogenetic tree along with three target opportunistic pathogenic strains, namely, M. avium, M. triplex and M. simiae. Potential virulence genes are indeed expressed by M. shigaense under culture conditions. Phenotypically, M. shigaense had similar infection and replication capacities in a macrophage model as the opportunistic species compared to M. tuberculosis. M. shigaense activated NF-κB, TNF, cytokines and chemokines in the host innate immune-related signaling pathways and elicited an early response shared with pathogenic bacilli except M. tuberculosis. M. shigaense upregulated specific host response genes such as TLR7, CCL4 and CXCL5. We performed an integrated and comparative analysis of M. shigaense. Multigroup comparison indicated certain differences with typical pathogenic bacilli in terms of gene features and the macrophage response.

DOI: 10.1038/s41426-018-0116-z
PubMed: 29934568
PubMed Central: PMC6015043


Affiliations:


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Le document en format XML

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<name sortKey="Vissa, Varalakshmi" sort="Vissa, Varalakshmi" uniqKey="Vissa V" first="Varalakshmi" last="Vissa">Varalakshmi Vissa</name>
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<title xml:lang="en">Landscape of the genome and host cell response of Mycobacterium shigaense reveals pathogenic features.</title>
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<name sortKey="Sun, Jiya" sort="Sun, Jiya" uniqKey="Sun J" first="Jiya" last="Sun">Jiya Sun</name>
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<name sortKey="Wang, Le" sort="Wang, Le" uniqKey="Wang L" first="Le" last="Wang">Le Wang</name>
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<name sortKey="Gao, Wei" sort="Gao, Wei" uniqKey="Gao W" first="Wei" last="Gao">Wei Gao</name>
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<name sortKey="Shi, Ying" sort="Shi, Ying" uniqKey="Shi Y" first="Ying" last="Shi">Ying Shi</name>
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<name sortKey="Zhang, Wenyue" sort="Zhang, Wenyue" uniqKey="Zhang W" first="Wenyue" last="Zhang">Wenyue Zhang</name>
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<div type="abstract" xml:lang="en">A systems approach was used to explore the genome and transcriptome of Mycobacterium shigaense, a new opportunistic pathogen isolated from a patient with a skin infection, and the host response transcriptome was assessed using a macrophage infection model. The M. shigaense genome comprises 5,207,883 bp, with 67.2% G+C content and 5098 predicted coding genes. Evolutionarily, the bacterium belongs to a cluster in the phylogenetic tree along with three target opportunistic pathogenic strains, namely, M. avium, M. triplex and M. simiae. Potential virulence genes are indeed expressed by M. shigaense under culture conditions. Phenotypically, M. shigaense had similar infection and replication capacities in a macrophage model as the opportunistic species compared to M. tuberculosis. M. shigaense activated NF-κB, TNF, cytokines and chemokines in the host innate immune-related signaling pathways and elicited an early response shared with pathogenic bacilli except M. tuberculosis. M. shigaense upregulated specific host response genes such as TLR7, CCL4 and CXCL5. We performed an integrated and comparative analysis of M. shigaense. Multigroup comparison indicated certain differences with typical pathogenic bacilli in terms of gene features and the macrophage response.</div>
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<AbstractText>A systems approach was used to explore the genome and transcriptome of Mycobacterium shigaense, a new opportunistic pathogen isolated from a patient with a skin infection, and the host response transcriptome was assessed using a macrophage infection model. The M. shigaense genome comprises 5,207,883 bp, with 67.2% G+C content and 5098 predicted coding genes. Evolutionarily, the bacterium belongs to a cluster in the phylogenetic tree along with three target opportunistic pathogenic strains, namely, M. avium, M. triplex and M. simiae. Potential virulence genes are indeed expressed by M. shigaense under culture conditions. Phenotypically, M. shigaense had similar infection and replication capacities in a macrophage model as the opportunistic species compared to M. tuberculosis. M. shigaense activated NF-κB, TNF, cytokines and chemokines in the host innate immune-related signaling pathways and elicited an early response shared with pathogenic bacilli except M. tuberculosis. M. shigaense upregulated specific host response genes such as TLR7, CCL4 and CXCL5. We performed an integrated and comparative analysis of M. shigaense. Multigroup comparison indicated certain differences with typical pathogenic bacilli in terms of gene features and the macrophage response.</AbstractText>
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